Variant report

Variant	rs6131747
Chromosome Location	chr20:15943737-15943738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1012298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12624676	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1339257	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1339258	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs2281418	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58630549	0.84[AMR][1000 genomes]
rs59581588	0.80[AMR][1000 genomes]
rs60190468	0.80[AMR][1000 genomes]
rs6034328	0.85[CHB][hapmap]
rs6043620	0.85[CHB][hapmap]
rs6074979	0.84[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6074980	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6074983	0.86[ASN][1000 genomes]
rs6074984	0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs6080023	0.85[CHB][hapmap]
rs6080032	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6080042	0.81[EUR][1000 genomes]
rs6080044	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6080048	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6080050	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6080052	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6080055	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080056	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080063	0.83[JPT][hapmap]
rs6080064	0.88[ASN][1000 genomes]
rs6080069	0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs6110832	0.90[CHB][hapmap]
rs6110847	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6110848	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6131738	0.81[CHB][hapmap]
rs6131739	0.80[AMR][1000 genomes]
rs6131740	0.93[AMR][1000 genomes]
rs6131741	0.93[AMR][1000 genomes]
rs6131743	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6131745	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6131748	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6131749	0.87[ASN][1000 genomes]
rs6131750	0.88[ASN][1000 genomes]
rs6135598	0.82[JPT][hapmap];0.93[AMR][1000 genomes]
rs6135600	0.93[AMR][1000 genomes]
rs6135601	0.93[AMR][1000 genomes]
rs6135602	0.84[AMR][1000 genomes]
rs6135603	0.93[AMR][1000 genomes]
rs6135604	0.93[AMR][1000 genomes]
rs6135605	0.84[JPT][hapmap];0.82[AMR][1000 genomes]
rs6135606	0.82[AMR][1000 genomes]
rs6135607	0.80[AMR][1000 genomes]
rs6135608	0.80[AMR][1000 genomes]
rs6135614	0.93[AMR][1000 genomes]
rs6135620	0.85[ASN][1000 genomes]
rs6135621	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6135622	0.84[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs766970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8183396	0.82[AMR][1000 genomes]
rs9967921	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15939600-15947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15942200-15944200	Weak transcription	Primary B cells from cord blood	blood
4	chr20:15942600-15944000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15943000-15954600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:15943400-15943800	Enhancers	Pancreatic Islets	Pancreatic Islet

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