Variant report

Variant	rs6135598
Chromosome Location	chr20:15891973-15891974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1012298	0.82[JPT][hapmap]
rs12624676	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2281418	0.82[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes]
rs58630549	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59581588	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60190468	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6074964	0.81[GIH][hapmap]
rs6074980	0.82[MEX][hapmap]
rs6074983	0.84[ASN][1000 genomes]
rs6080024	0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6080032	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6080044	0.81[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6080048	0.82[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes]
rs6080050	0.82[JPT][hapmap]
rs6080055	0.91[AMR][1000 genomes]
rs6080056	0.91[AMR][1000 genomes]
rs6080057	0.82[JPT][hapmap];0.93[MEX][hapmap];0.91[AMR][1000 genomes]
rs6080058	0.82[JPT][hapmap];0.93[MEX][hapmap];0.91[AMR][1000 genomes]
rs6080063	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6080064	0.87[ASN][1000 genomes]
rs6110847	0.82[MEX][hapmap]
rs6131737	0.80[JPT][hapmap]
rs6131739	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6131740	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6131741	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6131743	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6131745	0.82[JPT][hapmap];0.89[AMR][1000 genomes]
rs6131747	0.82[JPT][hapmap];0.93[AMR][1000 genomes]
rs6131748	0.82[JPT][hapmap]
rs6131749	0.88[ASN][1000 genomes]
rs6131750	0.87[ASN][1000 genomes]
rs6135588	0.82[CHD][hapmap];0.87[MEX][hapmap]
rs6135592	0.81[JPT][hapmap]
rs6135593	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6135594	0.80[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs6135595	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6135600	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6135601	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6135602	0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135603	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6135604	0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6135605	0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6135606	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6135607	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6135608	0.81[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6135613	0.94[ASN][1000 genomes]
rs6135614	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6135620	0.83[ASN][1000 genomes]
rs766970	0.82[JPT][hapmap]
rs8183396	0.82[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15887000-15892800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr20:15890000-15894200	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:15890600-15893000	Strong transcription	Primary B cells from cord blood	blood
5	chr20:15891000-15896800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:15891600-15892000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr20:15891800-15893000	Enhancers	HUVEC	blood vessel

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