Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12481296	1.00[YRI][hapmap]
rs16996627	0.81[JPT][hapmap]
rs4814406	1.00[CEU][hapmap]
rs6034345	1.00[YRI][hapmap]
rs6043665	1.00[YRI][hapmap]
rs6080024	0.87[JPT][hapmap]
rs6080063	0.81[JPT][hapmap]
rs6131728	0.81[JPT][hapmap]
rs6131733	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs6131735	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6131737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6135572	0.82[CEU][hapmap]
rs6135574	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs6135583	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6135584	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6135585	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6135586	0.82[ASN][1000 genomes]
rs6135587	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6135588	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6135593	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135594	1.00[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135595	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135598	0.81[JPT][hapmap]
rs8183396	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15870800-15876200	Weak transcription	GM12878-XiMat	blood
2	chr20:15872000-15875800	Strong transcription	Primary B cells from cord blood	blood
3	chr20:15872200-15876000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr20:15874600-15876800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:15875400-15877200	Enhancers	Primary hematopoietic stem cells	blood
6	chr20:15875600-15876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:15875600-15876200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr20:15875600-15876400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:15875600-15876400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr20:15875600-15876600	Enhancers	HSMM	muscle
11	chr20:15875600-15877000	Enhancers	Primary T cells from cord blood	blood
12	chr20:15875600-15877200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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