Variant report

Variant	rs6131733
Chromosome Location	chr20:15841177-15841178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12480694	0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs12481296	1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16996627	1.00[ASW][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16996681	1.00[ASW][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2041420	0.88[JPT][hapmap]
rs2191518	0.86[JPT][hapmap]
rs2327968	0.88[JPT][hapmap];0.85[MEX][hapmap]
rs2876414	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap]
rs34591655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4555415	0.88[JPT][hapmap]
rs4814404	1.00[ASW][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4814405	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4814406	0.82[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6034299	0.81[JPT][hapmap]
rs6043561	0.81[JPT][hapmap]
rs6043570	0.81[JPT][hapmap]
rs6079983	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6080024	0.81[JPT][hapmap]
rs6131728	1.00[ASW][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6131729	0.88[JPT][hapmap]
rs6131731	0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6131737	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6135567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6135568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6135570	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135571	0.89[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135572	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6135574	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6135588	0.82[CEU][hapmap]
rs6135592	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs6135593	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6135594	0.82[CEU][hapmap]
rs7268461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73898562	0.82[EUR][1000 genomes]
rs978767	0.88[JPT][hapmap]
rs978768	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15840600-15855600	Weak transcription	Primary B cells from cord blood	blood

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