Variant report
Variant | rs2876414 |
---|---|
Chromosome Location | chr20:15813704-15813705 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12480694 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12481296 | 0.88[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes] |
rs16996627 | 0.88[JPT][hapmap];0.85[MEX][hapmap] |
rs16996681 | 0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes] |
rs2041420 | 0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
rs2191518 | 0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2327968 | 1.00[ASW][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4555415 | 0.86[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4814404 | 0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes] |
rs4814405 | 0.93[ASN][1000 genomes] |
rs4814406 | 1.00[CHB][hapmap];0.80[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6034299 | 0.90[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
rs6034302 | 0.90[ASN][1000 genomes] |
rs6043561 | 0.89[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6043570 | 0.90[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
rs6079982 | 0.88[ASN][1000 genomes] |
rs6079983 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6131728 | 0.88[JPT][hapmap] |
rs6131729 | 0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rs6131731 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6131733 | 0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap] |
rs6135561 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6135567 | 0.90[ASN][1000 genomes] |
rs6135568 | 0.89[ASN][1000 genomes] |
rs6135570 | 0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6135571 | 0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes] |
rs6135574 | 0.88[JPT][hapmap] |
rs978767 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes] |
rs978768 | 0.82[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv2754713 | chr20:15785800-15816800 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv585645 | chr20:15796051-15817106 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv458935 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv585646 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv585647 | chr20:15802809-15817106 | Enhancers Weak transcription Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
10 | nsv585648 | chr20:15807441-15829235 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv518011 | chr20:15813644-15817106 | Weak transcription Enhancers Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15813400-15814400 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr20:15813400-15814400 | Weak transcription | Brain Germinal Matrix | brain |