Variant report

Variant	rs2191518
Chromosome Location	chr20:15818280-15818281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12480694	0.93[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12481296	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs16996627	0.86[JPT][hapmap]
rs16996681	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs175803	0.86[CEU][hapmap]
rs175810	0.87[CEU][hapmap]
rs175816	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs175817	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs175818	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs2041420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191516	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs2191517	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs2191519	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2327968	0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2876414	0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs4555415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4814404	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4814405	0.92[ASN][1000 genomes]
rs4814406	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs6034296	0.81[CEU][hapmap]
rs6034297	0.85[CEU][hapmap]
rs6034299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6034302	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6034303	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6034304	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6043561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6043569	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6043570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6043571	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6043572	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6074956	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6079982	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6079983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6131728	0.86[JPT][hapmap]
rs6131729	0.87[JPT][hapmap]
rs6131731	0.93[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs6131733	0.86[JPT][hapmap]
rs6135565	0.81[CEU][hapmap];0.83[YRI][hapmap]
rs6135567	0.85[ASN][1000 genomes]
rs6135568	0.86[ASN][1000 genomes]
rs6135570	0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6135571	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs6135574	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs978767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain

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