Variant report
Variant | rs6034302 |
---|---|
Chromosome Location | chr20:15821895-15821896 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs12480694 | 0.92[ASN][1000 genomes] |
rs12481296 | 0.92[ASN][1000 genomes] |
rs16996681 | 0.86[ASN][1000 genomes] |
rs175803 | 0.87[AFR][1000 genomes] |
rs175810 | 0.87[AFR][1000 genomes] |
rs2041420 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2191518 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2191519 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2327968 | 0.87[ASN][1000 genomes] |
rs2876414 | 0.90[ASN][1000 genomes] |
rs4555415 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4814404 | 0.92[ASN][1000 genomes] |
rs4814405 | 0.93[ASN][1000 genomes] |
rs4814406 | 0.94[ASN][1000 genomes] |
rs6034297 | 0.83[AFR][1000 genomes] |
rs6034299 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6043561 | 0.93[ASN][1000 genomes] |
rs6043569 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6043570 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6079982 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6079983 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6131729 | 0.81[ASN][1000 genomes] |
rs6131731 | 0.91[ASN][1000 genomes] |
rs6135565 | 0.83[AFR][1000 genomes] |
rs6135567 | 0.89[ASN][1000 genomes] |
rs6135568 | 0.88[ASN][1000 genomes] |
rs6135570 | 0.85[ASN][1000 genomes] |
rs6135571 | 0.84[ASN][1000 genomes] |
rs978767 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs978768 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv585648 | chr20:15807441-15829235 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15815800-15829600 | Weak transcription | Fetal Brain Female | brain |
2 | chr20:15820800-15822000 | Enhancers | Colon Smooth Muscle | Colon |
3 | chr20:15821000-15822000 | Enhancers | Fetal Brain Male | brain |