Variant report

Variant	rs6131729
Chromosome Location	chr20:15811604-15811605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12480694	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12481296	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs16996627	0.88[JPT][hapmap]
rs16996681	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2041420	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2191518	0.87[JPT][hapmap]
rs2327968	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2876414	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4555415	0.88[JPT][hapmap]
rs4814404	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4814405	0.84[ASN][1000 genomes]
rs4814406	0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6034299	0.94[JPT][hapmap]
rs6034302	0.81[ASN][1000 genomes]
rs6043561	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6043570	0.94[JPT][hapmap]
rs6079983	0.86[JPT][hapmap]
rs6131728	0.88[JPT][hapmap]
rs6131731	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6131733	0.88[JPT][hapmap]
rs6135561	1.00[AFR][1000 genomes]
rs6135567	0.80[ASN][1000 genomes]
rs6135570	0.94[JPT][hapmap]
rs6135571	1.00[JPT][hapmap]
rs6135574	0.88[JPT][hapmap]
rs978767	0.88[JPT][hapmap]
rs978768	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754713	chr20:15785800-15816800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585645	chr20:15796051-15817106	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv458935	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585646	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv585647	chr20:15802809-15817106	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15806000-15812000	Weak transcription	Gastric	stomach
2	chr20:15811400-15812400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:15811400-15812400	Enhancers	NHEK	skin
4	chr20:15811600-15812000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:15811600-15812400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:15811600-15812400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:15811600-15812600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links