Variant report
Variant | rs6135574 |
---|---|
Chromosome Location | chr20:15845515-15845516 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12480694 | 0.82[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes] |
rs12481296 | 0.94[JPT][hapmap];0.81[AMR][1000 genomes] |
rs16996627 | 0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs16996681 | 0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2041420 | 0.88[JPT][hapmap] |
rs2191518 | 0.81[CHB][hapmap];0.80[JPT][hapmap] |
rs2327968 | 0.88[JPT][hapmap] |
rs2876414 | 0.88[JPT][hapmap] |
rs34591655 | 0.80[EUR][1000 genomes] |
rs4555415 | 0.88[JPT][hapmap] |
rs4814404 | 0.88[JPT][hapmap];0.81[AMR][1000 genomes] |
rs4814405 | 0.81[AMR][1000 genomes] |
rs4814406 | 0.83[JPT][hapmap];0.81[AMR][1000 genomes] |
rs6034299 | 0.81[JPT][hapmap] |
rs6043561 | 0.81[JPT][hapmap] |
rs6043570 | 0.81[JPT][hapmap] |
rs6079983 | 0.82[CHB][hapmap] |
rs6080024 | 0.81[JPT][hapmap] |
rs6131728 | 0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6131729 | 0.88[JPT][hapmap] |
rs6131731 | 0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes] |
rs6131733 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6131734 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6131737 | 0.82[CEU][hapmap];0.81[JPT][hapmap] |
rs6135567 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6135568 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6135570 | 0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6135571 | 0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6135572 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6135588 | 0.82[CEU][hapmap] |
rs6135592 | 0.82[CEU][hapmap];0.81[JPT][hapmap] |
rs6135593 | 0.82[CEU][hapmap];0.82[JPT][hapmap] |
rs6135594 | 0.82[CEU][hapmap] |
rs7268461 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs73898562 | 0.84[EUR][1000 genomes] |
rs978767 | 0.88[JPT][hapmap] |
rs978768 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15840600-15855600 | Weak transcription | Primary B cells from cord blood | blood |
2 | chr20:15842800-15847600 | Weak transcription | Colon Smooth Muscle | Colon |