Variant report
Variant | rs6135594 |
---|---|
Chromosome Location | chr20:15878616-15878617 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16996627 | 0.81[JPT][hapmap] |
rs3827081 | 0.83[MEX][hapmap] |
rs4814406 | 1.00[CEU][hapmap] |
rs6034319 | 0.83[MEX][hapmap] |
rs6043593 | 0.83[MEX][hapmap] |
rs6043594 | 0.83[MEX][hapmap] |
rs6074964 | 1.00[GIH][hapmap] |
rs6080024 | 0.83[CHD][hapmap];0.81[GIH][hapmap] |
rs6080044 | 0.93[JPT][hapmap];0.81[MEX][hapmap] |
rs6080057 | 0.81[MEX][hapmap] |
rs6080058 | 0.81[MEX][hapmap] |
rs6080063 | 0.87[JPT][hapmap] |
rs6131728 | 0.81[JPT][hapmap] |
rs6131733 | 0.82[CEU][hapmap] |
rs6131735 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6131737 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6131740 | 0.82[AMR][1000 genomes] |
rs6131741 | 0.82[AMR][1000 genomes] |
rs6135572 | 0.82[CEU][hapmap] |
rs6135574 | 0.82[CEU][hapmap] |
rs6135583 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135584 | 0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135585 | 0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135587 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135588 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135589 | 0.88[MEX][hapmap] |
rs6135590 | 0.88[MEX][hapmap] |
rs6135591 | 0.83[MEX][hapmap] |
rs6135592 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6135593 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6135595 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6135598 | 0.80[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes] |
rs6135600 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135601 | 0.82[AMR][1000 genomes] |
rs6135602 | 0.81[GIH][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
rs6135603 | 0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135604 | 0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135605 | 0.92[JPT][hapmap] |
rs6135607 | 0.93[JPT][hapmap] |
rs6135608 | 0.81[GIH][hapmap];0.93[JPT][hapmap] |
rs6135614 | 0.82[AMR][1000 genomes] |
rs8183396 | 0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv3368299 | chr20:15878455-15878616 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15876400-15880800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr20:15876400-15883200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr20:15876800-15880600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
4 | chr20:15877600-15882400 | Weak transcription | Primary B cells from cord blood | blood |