Variant report

Variant	rs8183396
Chromosome Location	chr20:15886612-15886613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12481033	1.00[ASW][hapmap]
rs12624676	0.82[AMR][1000 genomes]
rs2281418	0.82[MEX][hapmap]
rs4814406	1.00[CEU][hapmap]
rs59581588	0.81[ASN][1000 genomes]
rs60190468	0.83[ASN][1000 genomes]
rs6074964	0.94[GIH][hapmap]
rs6074980	0.82[MEX][hapmap]
rs6080024	0.87[GIH][hapmap];0.81[JPT][hapmap]
rs6080032	0.82[AMR][1000 genomes]
rs6080044	0.94[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.82[AMR][1000 genomes]
rs6080048	0.82[MEX][hapmap]
rs6080057	0.93[MEX][hapmap]
rs6080058	0.93[MEX][hapmap]
rs6080063	0.88[JPT][hapmap]
rs6110847	0.82[MEX][hapmap]
rs6131735	0.85[AMR][1000 genomes]
rs6131737	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6131739	0.83[ASN][1000 genomes]
rs6131740	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6131741	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6131743	0.82[AMR][1000 genomes]
rs6131747	0.82[AMR][1000 genomes]
rs6135583	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6135584	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6135585	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6135587	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6135588	1.00[ASW][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6135592	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6135593	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135594	0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6135595	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6135598	0.82[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6135600	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6135601	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6135602	0.87[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap]
rs6135603	0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6135604	0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6135605	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6135606	0.83[ASN][1000 genomes]
rs6135607	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6135608	0.87[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs6135613	0.85[ASN][1000 genomes]
rs6135614	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15882800-15887200	Weak transcription	Primary B cells from cord blood	blood
2	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15885800-15887000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:15886200-15887000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:15886400-15886800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:15886400-15887000	Enhancers	Fetal Muscle Leg	muscle
7	chr20:15886600-15889400	Weak transcription	Colon Smooth Muscle	Colon

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