Variant report

Variant	rs12624676
Chromosome Location	chr20:15941950-15941951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1012298	0.86[ASN][1000 genomes]
rs1339257	0.83[ASN][1000 genomes]
rs1339258	0.83[ASN][1000 genomes]
rs2281418	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58630549	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59581588	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60190468	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6074979	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6074980	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6074983	0.96[ASN][1000 genomes]
rs6074984	0.81[ASN][1000 genomes]
rs6080024	0.86[ASN][1000 genomes]
rs6080032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6080042	0.83[EUR][1000 genomes]
rs6080044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6080048	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6080050	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6080052	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6080055	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6080056	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6080057	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6080058	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6080064	0.99[ASN][1000 genomes]
rs6110847	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6110848	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6131739	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6131740	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6131741	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6131743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6131745	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6131747	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6131748	0.84[ASN][1000 genomes]
rs6131749	0.98[ASN][1000 genomes]
rs6131750	0.99[ASN][1000 genomes]
rs6135598	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6135600	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135601	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6135602	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6135603	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135604	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135605	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135606	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135607	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135608	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6135613	0.89[ASN][1000 genomes]
rs6135614	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6135620	0.95[ASN][1000 genomes]
rs6135621	0.87[ASN][1000 genomes]
rs766970	0.85[ASN][1000 genomes]
rs8183396	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15939600-15947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15940600-15942200	Strong transcription	Primary B cells from cord blood	blood
4	chr20:15941600-15943000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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