Variant report

Variant	rs6131750
Chromosome Location	chr20:15947095-15947096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1012298	0.85[ASN][1000 genomes]
rs12624676	0.99[ASN][1000 genomes]
rs1339257	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1339258	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2281418	0.82[ASN][1000 genomes]
rs58630549	0.88[ASN][1000 genomes]
rs59581588	0.87[ASN][1000 genomes]
rs60190468	0.89[ASN][1000 genomes]
rs6074979	0.82[ASN][1000 genomes]
rs6074980	0.82[ASN][1000 genomes]
rs6074983	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6074984	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6080024	0.85[ASN][1000 genomes]
rs6080032	0.91[ASN][1000 genomes]
rs6080044	0.93[ASN][1000 genomes]
rs6080048	0.83[ASN][1000 genomes]
rs6080050	0.83[ASN][1000 genomes]
rs6080052	0.86[ASN][1000 genomes]
rs6080055	0.88[ASN][1000 genomes]
rs6080056	0.88[ASN][1000 genomes]
rs6080057	0.88[ASN][1000 genomes]
rs6080058	0.88[ASN][1000 genomes]
rs6080064	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080069	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6105504	0.95[EUR][1000 genomes]
rs6110847	0.82[ASN][1000 genomes]
rs6110848	0.82[ASN][1000 genomes]
rs6131739	0.89[ASN][1000 genomes]
rs6131740	0.89[ASN][1000 genomes]
rs6131741	0.89[ASN][1000 genomes]
rs6131743	0.95[ASN][1000 genomes]
rs6131745	0.84[ASN][1000 genomes]
rs6131747	0.88[ASN][1000 genomes]
rs6131748	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6131749	0.99[ASN][1000 genomes]
rs6135598	0.87[ASN][1000 genomes]
rs6135600	0.88[ASN][1000 genomes]
rs6135601	0.90[ASN][1000 genomes]
rs6135602	0.85[ASN][1000 genomes]
rs6135603	0.88[ASN][1000 genomes]
rs6135604	0.88[ASN][1000 genomes]
rs6135605	0.89[ASN][1000 genomes]
rs6135606	0.89[ASN][1000 genomes]
rs6135607	0.89[ASN][1000 genomes]
rs6135608	0.89[ASN][1000 genomes]
rs6135613	0.88[ASN][1000 genomes]
rs6135614	0.89[ASN][1000 genomes]
rs6135620	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135621	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135622	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs766970	0.84[ASN][1000 genomes]
rs8126173	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15943000-15954600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:15944200-15952200	Strong transcription	Primary B cells from cord blood	blood
4	chr20:15947000-15947400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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