Variant report

Variant	rs6080024
Chromosome Location	chr20:15902299-15902300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1012298	0.84[AMR][1000 genomes]
rs12624676	0.86[ASN][1000 genomes]
rs16996627	0.81[JPT][hapmap]
rs2281418	0.85[CHD][hapmap]
rs58630549	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59581588	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60190468	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6034325	0.82[AFR][1000 genomes]
rs6034328	0.84[EUR][1000 genomes]
rs6034330	0.82[EUR][1000 genomes]
rs6043620	0.84[EUR][1000 genomes]
rs6043624	0.82[EUR][1000 genomes]
rs6043632	0.89[ASW][hapmap]
rs6074964	0.81[GIH][hapmap]
rs6074983	0.82[ASN][1000 genomes]
rs6074984	0.82[CHD][hapmap]
rs6080023	0.84[EUR][1000 genomes]
rs6080032	0.91[ASN][1000 genomes]
rs6080044	0.83[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs6080048	0.85[CHD][hapmap]
rs6080063	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs6080064	0.85[ASN][1000 genomes]
rs6080069	0.82[CHD][hapmap]
rs6110847	0.82[CHD][hapmap]
rs6131728	0.81[JPT][hapmap]
rs6131733	0.81[JPT][hapmap]
rs6131737	0.87[JPT][hapmap]
rs6131739	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6131740	0.92[ASN][1000 genomes]
rs6131741	0.91[ASN][1000 genomes]
rs6131743	0.88[ASN][1000 genomes]
rs6131749	0.84[ASN][1000 genomes]
rs6131750	0.85[ASN][1000 genomes]
rs6135574	0.81[JPT][hapmap]
rs6135592	0.87[JPT][hapmap]
rs6135593	0.88[JPT][hapmap]
rs6135594	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs6135598	0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6135600	0.90[ASN][1000 genomes]
rs6135601	0.94[ASN][1000 genomes]
rs6135602	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135603	0.91[ASN][1000 genomes]
rs6135604	0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs6135605	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135606	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135607	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135608	0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135613	0.91[ASN][1000 genomes]
rs6135614	0.91[ASN][1000 genomes]
rs6135620	0.89[ASN][1000 genomes]
rs722337	0.84[EUR][1000 genomes]
rs766970	0.82[CHD][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes]
rs8183396	0.87[GIH][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15897800-15907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:15898200-15902600	Weak transcription	Fetal Stomach	stomach
4	chr20:15899200-15903000	Enhancers	Primary B cells from peripheral blood	blood
5	chr20:15902200-15904000	Flanking Active TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links