Variant report

Variant	rs6074983
Chromosome Location	chr20:15955526-15955527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1012298	0.85[ASN][1000 genomes]
rs12624676	0.96[ASN][1000 genomes]
rs1339257	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1339258	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2281418	0.81[ASN][1000 genomes]
rs58630549	0.85[ASN][1000 genomes]
rs59581588	0.84[ASN][1000 genomes]
rs60190468	0.86[ASN][1000 genomes]
rs6074979	0.82[ASN][1000 genomes]
rs6074980	0.82[ASN][1000 genomes]
rs6074984	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6080024	0.82[ASN][1000 genomes]
rs6080032	0.88[ASN][1000 genomes]
rs6080044	0.92[ASN][1000 genomes]
rs6080048	0.81[ASN][1000 genomes]
rs6080050	0.81[ASN][1000 genomes]
rs6080052	0.85[ASN][1000 genomes]
rs6080055	0.86[ASN][1000 genomes]
rs6080056	0.86[ASN][1000 genomes]
rs6080057	0.86[ASN][1000 genomes]
rs6080058	0.86[ASN][1000 genomes]
rs6080064	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6080069	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6105504	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6110847	0.82[ASN][1000 genomes]
rs6110848	0.82[ASN][1000 genomes]
rs6131739	0.86[ASN][1000 genomes]
rs6131740	0.86[ASN][1000 genomes]
rs6131741	0.87[ASN][1000 genomes]
rs6131743	0.94[ASN][1000 genomes]
rs6131745	0.82[ASN][1000 genomes]
rs6131747	0.86[ASN][1000 genomes]
rs6131748	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6131749	0.96[ASN][1000 genomes]
rs6131750	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135598	0.84[ASN][1000 genomes]
rs6135600	0.85[ASN][1000 genomes]
rs6135601	0.88[ASN][1000 genomes]
rs6135602	0.82[ASN][1000 genomes]
rs6135603	0.85[ASN][1000 genomes]
rs6135604	0.85[ASN][1000 genomes]
rs6135605	0.86[ASN][1000 genomes]
rs6135606	0.86[ASN][1000 genomes]
rs6135607	0.86[ASN][1000 genomes]
rs6135608	0.86[ASN][1000 genomes]
rs6135613	0.86[ASN][1000 genomes]
rs6135614	0.87[ASN][1000 genomes]
rs6135620	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6135621	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135622	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs766970	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15953000-15959800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15953400-15957400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15954600-15955800	Strong transcription	Primary B cells from cord blood	blood
4	chr20:15954600-15956600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15954600-15959200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:15954800-15955600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:15954800-15958800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:15955000-15955600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15955000-15956000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:15955000-15956600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr20:15955000-15957800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:15955400-15956400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr20:15955400-15956600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:15955400-15956600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr20:15955400-15957000	Weak transcription	Adipose Nuclei	Adipose

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