Variant report

Variant	rs6110836
Chromosome Location	chr20:15914464-15914465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2281418	0.94[CHB][hapmap];0.83[CHD][hapmap];0.80[ASN][1000 genomes]
rs60190468	0.83[EUR][1000 genomes]
rs6034327	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6034328	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6034330	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043620	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6043624	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6074979	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs6074980	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs6074984	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs6080021	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs6080023	0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6080048	0.95[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs6080050	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs6080069	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs6105492	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6105495	0.89[AFR][1000 genomes]
rs6110832	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6110837	0.92[AFR][1000 genomes]
rs6110847	0.89[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs6110848	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs6131738	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6131739	0.83[EUR][1000 genomes]
rs6131745	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs6131748	0.94[CHB][hapmap]
rs6135602	0.83[EUR][1000 genomes]
rs6135605	0.83[EUR][1000 genomes]
rs6135606	0.83[EUR][1000 genomes]
rs6135607	0.83[EUR][1000 genomes]
rs6135608	0.83[EUR][1000 genomes]
rs6135612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6135622	0.95[CHB][hapmap]
rs722337	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766970	0.81[CHD][hapmap]
rs9967921	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15904800-15916200	Weak transcription	GM12878-XiMat	blood
3	chr20:15911600-15915000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15912000-15915000	Weak transcription	Fetal Brain Male	brain
5	chr20:15912000-15930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:15913000-15915600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:15913600-15917400	Weak transcription	Primary B cells from cord blood	blood
8	chr20:15913800-15917400	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links