Variant report

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs175806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs175809	0.90[AFR][1000 genomes]
rs175811	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60605413	0.82[EUR][1000 genomes]
rs6079984	0.84[ASN][1000 genomes]
rs6135569	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15828600-15829800	Enhancers	Brain Germinal Matrix	brain
2	chr20:15829000-15829800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:15829200-15830200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15829400-15829800	Enhancers	Brain Angular Gyrus	brain
5	chr20:15829400-15829800	Enhancers	Brain Hippocampus Middle	brain
6	chr20:15829400-15829800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr20:15829400-15830000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:15829400-15830000	Enhancers	Fetal Brain Male	brain
9	chr20:15829400-15830200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:15829400-15830200	Enhancers	Brain Substantia Nigra	brain
11	chr20:15829600-15829800	Enhancers	Fetal Brain Female	brain
12	chr20:15829600-15830000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr20:15829600-15830000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr20:15829600-15830200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:15829600-15830200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr20:15829600-15830200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:15829600-15830200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr20:15829600-15830200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:15829600-15830200	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr20:15829600-15830200	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr20:15829600-15830200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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