Variant report

Variant	rs6034400
Chromosome Location	chr20:16139714-16139715
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2327989	0.84[EUR][1000 genomes]
rs4239715	0.84[EUR][1000 genomes]
rs4239716	0.84[EUR][1000 genomes]
rs4814437	0.84[EUR][1000 genomes]
rs4814439	0.84[EUR][1000 genomes]
rs4814440	0.84[EUR][1000 genomes]
rs6080147	0.84[EUR][1000 genomes]
rs6080148	0.83[EUR][1000 genomes]
rs6080154	0.84[EUR][1000 genomes]
rs6110922	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16138200-16139800	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr20:16138200-16140200	Enhancers	Primary hematopoietic stem cells	blood
3	chr20:16138800-16140200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:16139000-16140000	Enhancers	Spleen	Spleen
5	chr20:16139000-16140200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:16139000-16140400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:16139400-16140200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr20:16139400-16140200	Enhancers	GM12878-XiMat	blood
9	chr20:16139400-16140600	Enhancers	Primary B cells from peripheral blood	blood
10	chr20:16139400-16143400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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