The 2.0 version of rSNPBase

Variant report

Variant rs6034534
Chromosome Location chr20:16548343-16548344
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16509200-16553000 Weak transcription Primary T cells from cord blood blood
2 chr20:16511600-16549000 Weak transcription Colonic Mucosa Colon
3 chr20:16534600-16553600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr20:16536000-16551400 Weak transcription Right Ventricle heart
5 chr20:16537000-16548800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr20:16537200-16549200 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr20:16537200-16552000 Weak transcription Stomach Smooth Muscle stomach
8 chr20:16537400-16550200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr20:16537400-16551200 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr20:16537400-16553400 Weak transcription Aorta Aorta
11 chr20:16537600-16551400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr20:16537600-16551400 Weak transcription Esophagus oesophagus
13 chr20:16537600-16551800 Weak transcription Adipose Nuclei Adipose
14 chr20:16538400-16550600 Weak transcription NHEK skin
15 chr20:16539200-16551400 Weak transcription Lung lung
16 chr20:16539400-16549800 Weak transcription Fetal Intestine Small intestine
17 chr20:16541000-16548800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr20:16541800-16551800 Weak transcription Left Ventricle heart
19 chr20:16543200-16551400 Weak transcription Psoas Muscle Psoas
20 chr20:16544200-16552600 Weak transcription A549 lung
21 chr20:16544400-16549600 Weak transcription HepG2 liver
22 chr20:16544400-16553000 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr20:16544600-16549800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr20:16544600-16549800 Weak transcription Fetal Kidney kidney
25 chr20:16544600-16553000 Weak transcription Primary hematopoietic stem cells blood
26 chr20:16545600-16549600 Weak transcription Pancreas Pancrea
27 chr20:16545600-16551800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr20:16545800-16551800 Weak transcription Gastric stomach
29 chr20:16546600-16551600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:16546600-16551800 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr20:16546600-16553400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr20:16546800-16552800 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr20:16547000-16552000 Weak transcription Fetal Muscle Leg muscle
34 chr20:16547200-16551400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr20:16547200-16552200 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr20:16547200-16552800 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr20:16547200-16552800 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr20:16547200-16553000 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr20:16548200-16551400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015