Variant report

Variant	rs4814510
Chromosome Location	chr20:16554067-16554068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2143985	0.87[CHB][hapmap]
rs2143989	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179904	0.82[CHB][hapmap]
rs2277778	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2328048	0.92[ASN][1000 genomes]
rs4813224	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4813226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4814512	0.92[ASN][1000 genomes]
rs6034521	0.82[CHB][hapmap]
rs6034527	0.81[CHB][hapmap]
rs6034530	0.82[CHB][hapmap]
rs6034534	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6044137	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044143	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6044163	0.89[ASN][1000 genomes]
rs6075072	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6111175	0.82[CHB][hapmap]
rs6131844	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs910319	0.88[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16551800-16555000	Active TSS	Colonic Mucosa	Colon
2	chr20:16552200-16554200	Active TSS	Rectal Mucosa Donor 31	rectum
3	chr20:16552200-16556600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:16552400-16555000	Active TSS	Ovary	ovary
5	chr20:16552800-16554200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:16552800-16554200	Active TSS	HMEC	breast
7	chr20:16552800-16555000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:16552800-16555000	Active TSS	K562	blood
9	chr20:16552800-16555200	Active TSS	Rectal Smooth Muscle	rectum
10	chr20:16552800-16556400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr20:16552800-16556400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr20:16553000-16554200	Active TSS	Fetal Intestine Small	intestine
13	chr20:16553000-16554200	Active TSS	Right Ventricle	heart
14	chr20:16553000-16554200	Active TSS	NHEK	skin
15	chr20:16553000-16554400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr20:16553000-16554400	Active TSS	Fetal Intestine Large	intestine
17	chr20:16553000-16554400	Active TSS	Right Atrium	heart
18	chr20:16553000-16554400	Active TSS	Hela-S3	cervix
19	chr20:16553000-16554400	Active TSS	NHDF-Ad	bronchial
20	chr20:16553000-16554600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr20:16553000-16554600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr20:16553000-16554800	Active TSS	Psoas Muscle	Psoas
23	chr20:16553000-16556400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr20:16553000-16556400	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr20:16553000-16557200	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr20:16553200-16554200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr20:16553200-16554200	Active TSS	Stomach Mucosa	stomach
28	chr20:16553200-16554400	Active TSS	Fetal Kidney	kidney
29	chr20:16553200-16554600	Active TSS	HSMMtube	muscle
30	chr20:16553200-16554600	Active TSS	NHLF	lung
31	chr20:16553200-16554800	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr20:16553200-16554800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr20:16553200-16555000	Active TSS	Brain Substantia Nigra	brain
34	chr20:16553200-16555000	Active TSS	GM12878-XiMat	blood
35	chr20:16553200-16555400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr20:16553200-16555800	Active TSS	HSMM	muscle
37	chr20:16553200-16556000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr20:16553200-16556200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr20:16553200-16556400	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr20:16553200-16556400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr20:16553200-16556600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr20:16553400-16554200	Active TSS	Muscle Satellite Cultured Cells	--
43	chr20:16553400-16554200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr20:16553400-16554200	Active TSS	Fetal Muscle Trunk	muscle
45	chr20:16553400-16554200	Active TSS	Placenta	Placenta
46	chr20:16553400-16554400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr20:16553400-16554400	Active TSS	Aorta	Aorta
48	chr20:16553400-16554400	Active TSS	Brain Germinal Matrix	brain
49	chr20:16553400-16554400	Active TSS	Esophagus	oesophagus
50	chr20:16553400-16554400	Active TSS	Left Ventricle	heart

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