Variant report

Variant	rs6034530
Chromosome Location	chr20:16541089-16541090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2143985	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2179904	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277778	0.81[CHB][hapmap]
rs4813224	0.87[CHB][hapmap]
rs4813226	0.81[CHB][hapmap]
rs4814510	0.82[CHB][hapmap]
rs6034521	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6034527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044081	0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6044117	0.85[JPT][hapmap]
rs6075072	0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs6080300	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111180	0.86[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
2	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
3	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:16536000-16551400	Weak transcription	Right Ventricle	heart
5	chr20:16537000-16543600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:16537000-16548800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr20:16537200-16549200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:16537200-16552000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr20:16537400-16545400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:16537400-16545400	Weak transcription	Pancreas	Pancrea
11	chr20:16537400-16550200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr20:16537400-16551200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr20:16537400-16553400	Weak transcription	Aorta	Aorta
14	chr20:16537600-16541200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr20:16537600-16543000	Weak transcription	Psoas Muscle	Psoas
16	chr20:16537600-16543600	Weak transcription	A549	lung
17	chr20:16537600-16545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:16537600-16551400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:16537600-16551400	Weak transcription	Esophagus	oesophagus
20	chr20:16537600-16551800	Weak transcription	Adipose Nuclei	Adipose
21	chr20:16538400-16546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr20:16538400-16550600	Weak transcription	NHEK	skin
23	chr20:16539000-16546200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr20:16539200-16551400	Weak transcription	Lung	lung
25	chr20:16539400-16549800	Weak transcription	Fetal Intestine Small	intestine
26	chr20:16541000-16541200	Enhancers	Left Ventricle	heart
27	chr20:16541000-16542400	Enhancers	Osteobl	bone
28	chr20:16541000-16548800	Weak transcription	Rectal Mucosa Donor 29	rectum

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