Variant report

Variant	rs6080300
Chromosome Location	chr20:16534461-16534462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2143985	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2179904	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6034521	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6034527	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034530	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044081	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6075072	0.82[EUR][1000 genomes]
rs6111175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
3	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:16520400-16534800	Weak transcription	Fetal Intestine Small	intestine
6	chr20:16522800-16536800	Weak transcription	Aorta	Aorta
7	chr20:16523400-16535400	Weak transcription	Left Ventricle	heart
8	chr20:16530200-16536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:16530400-16536400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr20:16532600-16535400	Weak transcription	Right Atrium	heart
11	chr20:16533000-16535000	Weak transcription	Psoas Muscle	Psoas
12	chr20:16533000-16535200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr20:16533000-16536000	Weak transcription	Fetal Kidney	kidney
14	chr20:16533200-16535200	Weak transcription	Fetal Muscle Leg	muscle
15	chr20:16533200-16536600	Weak transcription	Ovary	ovary
16	chr20:16533400-16534800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr20:16533400-16535800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr20:16533600-16536000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:16533800-16534600	Enhancers	Spleen	Spleen
20	chr20:16533800-16535000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr20:16533800-16535200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr20:16533800-16536000	Enhancers	Right Ventricle	heart
23	chr20:16533800-16537600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr20:16533800-16538400	Enhancers	NHEK	skin
25	chr20:16534000-16534600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr20:16534000-16534800	Enhancers	Brain Substantia Nigra	brain
27	chr20:16534000-16534800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr20:16534000-16534800	Enhancers	HepG2	liver
29	chr20:16534000-16536000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr20:16534000-16536000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr20:16534200-16534600	Enhancers	Brain Angular Gyrus	brain
32	chr20:16534200-16534600	Enhancers	Brain Cingulate Gyrus	brain
33	chr20:16534200-16535400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr20:16534200-16536800	Weak transcription	Small Intestine	intestine
35	chr20:16534200-16537600	Enhancers	Adipose Nuclei	Adipose
36	chr20:16534200-16537600	Enhancers	Esophagus	oesophagus
37	chr20:16534200-16538200	Weak transcription	Brain Anterior Caudate	brain
38	chr20:16534400-16534600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr20:16534400-16534600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr20:16534400-16534800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
41	chr20:16534400-16534800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr20:16534400-16534800	Enhancers	Brain Hippocampus Middle	brain
43	chr20:16534400-16534800	Enhancers	HMEC	breast
44	chr20:16534400-16535000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr20:16534400-16535000	Weak transcription	Colon Smooth Muscle	Colon
46	chr20:16534400-16535000	Enhancers	Pancreas	Pancrea
47	chr20:16534400-16535400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr20:16534400-16535400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr20:16534400-16535800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr20:16534400-16535800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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