Variant report

Variant	rs6111180
Chromosome Location	chr20:16540439-16540440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2179904	0.81[JPT][hapmap]
rs6034521	0.81[JPT][hapmap]
rs6034527	0.85[JPT][hapmap]
rs6034530	0.86[JPT][hapmap]
rs6044081	0.81[JPT][hapmap]
rs6044117	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044120	0.82[JPT][hapmap]
rs6111175	0.86[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6111180	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
2	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
3	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:16536000-16551400	Weak transcription	Right Ventricle	heart
5	chr20:16537000-16543600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:16537000-16548800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr20:16537200-16549200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:16537200-16552000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr20:16537400-16540800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr20:16537400-16545400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:16537400-16545400	Weak transcription	Pancreas	Pancrea
12	chr20:16537400-16550200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr20:16537400-16551200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr20:16537400-16553400	Weak transcription	Aorta	Aorta
15	chr20:16537600-16541000	Weak transcription	Osteobl	bone
16	chr20:16537600-16541200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr20:16537600-16543000	Weak transcription	Psoas Muscle	Psoas
18	chr20:16537600-16543600	Weak transcription	A549	lung
19	chr20:16537600-16545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr20:16537600-16551400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:16537600-16551400	Weak transcription	Esophagus	oesophagus
22	chr20:16537600-16551800	Weak transcription	Adipose Nuclei	Adipose
23	chr20:16538400-16546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr20:16538400-16550600	Weak transcription	NHEK	skin
25	chr20:16539000-16546200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr20:16539200-16541000	Weak transcription	Left Ventricle	heart
27	chr20:16539200-16551400	Weak transcription	Lung	lung
28	chr20:16539400-16549800	Weak transcription	Fetal Intestine Small	intestine

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