Variant report

Variant	rs6036300
Chromosome Location	chr20:23053164-23053165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11907361	0.94[ASN][1000 genomes]
rs17829240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41372845	0.82[ASN][1000 genomes]
rs6036299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6036301	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6048525	0.88[ASN][1000 genomes]
rs6048532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6048534	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7348306	0.80[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23043400-23063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23043600-23054000	Weak transcription	Lung	lung
3	chr20:23043600-23062200	Weak transcription	Placenta	Placenta
4	chr20:23043600-23066600	Weak transcription	Aorta	Aorta
5	chr20:23043800-23055200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr20:23047200-23057800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr20:23047800-23059000	Weak transcription	Right Atrium	heart
8	chr20:23050800-23061200	Weak transcription	Esophagus	oesophagus
9	chr20:23051200-23055000	Weak transcription	Primary T cells from cord blood	blood
10	chr20:23051800-23058400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr20:23052600-23053200	Enhancers	Fetal Lung	lung
12	chr20:23052600-23054200	Enhancers	Fetal Stomach	stomach
13	chr20:23052600-23055400	Enhancers	HUVEC	blood vessel
14	chr20:23053000-23053200	Enhancers	Ovary	ovary
15	chr20:23053000-23057000	Strong transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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