Variant report

Variant	rs6036301
Chromosome Location	chr20:23059188-23059189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11907361	0.94[ASN][1000 genomes]
rs17829240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41372845	0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6036299	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6036300	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6048525	0.88[ASN][1000 genomes]
rs6048532	1.00[ASN][1000 genomes]
rs6048534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7348306	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23043400-23063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23043600-23062200	Weak transcription	Placenta	Placenta
3	chr20:23043600-23066600	Weak transcription	Aorta	Aorta
4	chr20:23050800-23061200	Weak transcription	Esophagus	oesophagus
5	chr20:23053400-23061200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr20:23054000-23063400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr20:23055600-23061200	Weak transcription	Primary T cells from cord blood	blood
8	chr20:23055600-23061200	Weak transcription	Spleen	Spleen
9	chr20:23056000-23059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr20:23057800-23062000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr20:23058000-23059200	Weak transcription	K562	blood
12	chr20:23058000-23059600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr20:23058000-23061200	Weak transcription	Right Ventricle	heart
14	chr20:23058400-23061200	Genic enhancers	Monocytes-CD14+_RO01746	blood
15	chr20:23058400-23062400	Genic enhancers	Primary monocytes fromperipheralblood	blood
16	chr20:23058600-23060200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr20:23058600-23061600	Enhancers	Brain Germinal Matrix	brain
18	chr20:23058800-23059800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr20:23058800-23060400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr20:23058800-23061800	Genic enhancers	HUVEC	blood vessel
21	chr20:23059000-23059200	Enhancers	Fetal Muscle Leg	muscle
22	chr20:23059000-23059600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
23	chr20:23059000-23059600	Bivalent Enhancer	NHDF-Ad	bronchial
24	chr20:23059000-23059800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr20:23059000-23059800	Enhancers	Fetal Stomach	stomach
26	chr20:23059000-23059800	Enhancers	HSMM	muscle
27	chr20:23059000-23060000	Enhancers	Left Ventricle	heart
28	chr20:23059000-23060000	Enhancers	Lung	lung
29	chr20:23059000-23060000	Enhancers	Right Atrium	heart
30	chr20:23059000-23060400	Enhancers	HSMMtube	muscle

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