Variant report

Variant	rs603676
Chromosome Location	chr11:86866109-86866110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs11234985	0.94[ASN][1000 genomes]
rs12280110	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2048973	0.95[ASN][1000 genomes]
rs2247537	0.94[ASN][1000 genomes]
rs2445560	0.95[ASN][1000 genomes]
rs2445561	0.95[ASN][1000 genomes]
rs2451053	0.95[ASN][1000 genomes]
rs2451060	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2451061	0.95[ASN][1000 genomes]
rs2451062	0.95[ASN][1000 genomes]
rs2451063	0.95[ASN][1000 genomes]
rs2451064	0.95[ASN][1000 genomes]
rs2451065	0.83[ASN][1000 genomes]
rs2512338	0.95[ASN][1000 genomes]
rs2512342	0.95[ASN][1000 genomes]
rs2512343	0.95[ASN][1000 genomes]
rs2512344	0.95[ASN][1000 genomes]
rs2512350	0.97[ASN][1000 genomes]
rs2512490	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2512494	0.92[ASN][1000 genomes]
rs2512495	0.93[ASN][1000 genomes]
rs2512496	0.93[ASN][1000 genomes]
rs2932120	0.95[ASN][1000 genomes]
rs3018709	0.95[ASN][1000 genomes]
rs3018710	0.95[ASN][1000 genomes]
rs3103386	0.95[ASN][1000 genomes]
rs3133320	0.95[ASN][1000 genomes]
rs3133321	0.95[ASN][1000 genomes]
rs476597	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs477944	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs479593	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs480660	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs482258	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs482339	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs483373	0.97[ASN][1000 genomes]
rs483548	0.95[ASN][1000 genomes]
rs484135	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs484403	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486739	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487370	0.95[ASN][1000 genomes]
rs487678	0.95[ASN][1000 genomes]
rs488227	0.95[ASN][1000 genomes]
rs489247	0.84[ASN][1000 genomes]
rs491895	0.93[ASN][1000 genomes]
rs492211	0.97[ASN][1000 genomes]
rs492896	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs494698	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs495238	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs495668	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs496671	0.95[ASN][1000 genomes]
rs497592	0.97[ASN][1000 genomes]
rs499388	0.97[ASN][1000 genomes]
rs500312	0.95[ASN][1000 genomes]
rs502165	0.95[ASN][1000 genomes]
rs502580	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5028348	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs505429	0.82[EUR][1000 genomes]
rs509277	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs511694	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs511755	0.88[ASN][1000 genomes]
rs513662	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs518489	0.95[ASN][1000 genomes]
rs520755	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs522439	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531500	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs533056	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs534009	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs535515	0.97[ASN][1000 genomes]
rs537712	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs538494	0.95[ASN][1000 genomes]
rs540403	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs541089	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs541998	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs542678	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs542697	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs543687	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs543915	0.94[ASN][1000 genomes]
rs546229	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547867	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs549932	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs550988	0.95[ASN][1000 genomes]
rs552521	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs555190	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs556139	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs560624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561397	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs563688	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564877	0.95[ASN][1000 genomes]
rs565869	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566046	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs568905	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs570716	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs572433	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs576582	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs576679	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs578533	0.95[ASN][1000 genomes]
rs580120	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs581833	0.89[ASN][1000 genomes]
rs583334	0.95[ASN][1000 genomes]
rs593243	0.97[ASN][1000 genomes]
rs595930	0.93[ASN][1000 genomes]
rs597319	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs597344	0.95[ASN][1000 genomes]
rs597406	0.95[ASN][1000 genomes]
rs603140	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs604035	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs604199	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs606284	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606299	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs607619	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607894	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs608533	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608870	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608966	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs609819	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs609914	0.80[ASN][1000 genomes]
rs610228	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs611523	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs611579	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs612523	0.95[ASN][1000 genomes]
rs618926	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs620303	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs624004	0.98[ASN][1000 genomes]
rs625554	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs626897	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628447	0.95[ASN][1000 genomes]
rs628686	0.95[ASN][1000 genomes]
rs630249	0.95[ASN][1000 genomes]
rs632708	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs634277	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs636159	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs643145	0.85[ASN][1000 genomes]
rs643175	0.92[ASN][1000 genomes]
rs644083	0.97[ASN][1000 genomes]
rs644457	0.97[ASN][1000 genomes]
rs649693	0.90[ASN][1000 genomes]
rs651961	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs652171	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs653519	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs654405	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs654485	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs654569	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs655050	0.95[ASN][1000 genomes]
rs655778	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs655907	0.95[ASN][1000 genomes]
rs660246	0.95[ASN][1000 genomes]
rs664398	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs670125	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670857	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs672194	0.96[ASN][1000 genomes]
rs672269	0.90[ASN][1000 genomes]
rs673634	0.87[ASN][1000 genomes]
rs687208	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs687244	0.97[ASN][1000 genomes]
rs687651	0.90[ASN][1000 genomes]
rs688542	0.97[ASN][1000 genomes]
rs692857	0.95[ASN][1000 genomes]
rs7949278	0.95[ASN][1000 genomes]
rs7949665	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv898060	chr11:86822077-86912633	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv420	chr11:86845328-86890111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv898061	chr11:86850483-86944982	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv898062	chr11:86864277-86902079	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv898063	chr11:86864277-86944982	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86809000-86876000	Weak transcription	Left Ventricle	heart
2	chr11:86836800-86877200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86851200-86872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:86853400-86866600	Weak transcription	Right Atrium	heart
5	chr11:86860600-86866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:86862200-86867800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:86862600-86866600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:86862600-86867400	Weak transcription	HUVEC	blood vessel
9	chr11:86862600-86871600	Weak transcription	Primary T cells from cord blood	blood
10	chr11:86863200-86866600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:86863200-86866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:86863200-86866600	Weak transcription	Psoas Muscle	Psoas
13	chr11:86863200-86866600	Weak transcription	HepG2	liver
14	chr11:86863200-86867000	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86864000-86866600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links