Variant report

Variant	rs6036834
Chromosome Location	chr20:24528065-24528066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6049766	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.96[EUR][1000 genomes]
rs6049767	0.96[EUR][1000 genomes]
rs6049769	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.96[EUR][1000 genomes]
rs6049772	1.00[CEU][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes]
rs6049773	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6049776	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.98[EUR][1000 genomes]
rs6049777	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24521200-24528400	Weak transcription	HMEC	breast
2	chr20:24522800-24528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr20:24523000-24528200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
5	chr20:24523800-24528800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr20:24523800-24528800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:24525000-24528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
9	chr20:24526600-24529400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr20:24527200-24528600	Weak transcription	Brain Angular Gyrus	brain
11	chr20:24527400-24528600	Weak transcription	Aorta	Aorta
12	chr20:24527400-24528600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr20:24527400-24528800	Weak transcription	Brain Substantia Nigra	brain
14	chr20:24527400-24530600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr20:24527400-24531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr20:24527600-24529000	Genic enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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