Variant report

Variant	rs6049772
Chromosome Location	chr20:24524692-24524693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6036834	1.00[CEU][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes]
rs6049726	1.00[CHD][hapmap]
rs6049728	1.00[CHD][hapmap]
rs6049754	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6049766	1.00[CEU][hapmap];0.82[TSI][hapmap];0.94[EUR][1000 genomes]
rs6049767	0.94[EUR][1000 genomes]
rs6049769	1.00[CEU][hapmap];0.82[TSI][hapmap];0.94[EUR][1000 genomes]
rs6049773	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6049776	1.00[CEU][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs6049777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114748	1.00[CHD][hapmap]
rs73343312	0.87[ASN][1000 genomes]
rs73343343	1.00[ASN][1000 genomes]
rs8123492	1.00[ASN][1000 genomes]
rs8123552	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
2	chr20:24510800-24525200	Weak transcription	Left Ventricle	heart
3	chr20:24514800-24525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24515800-24524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:24517200-24526600	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24517200-24526800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:24521200-24528400	Weak transcription	HMEC	breast
8	chr20:24522400-24526800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr20:24522800-24526600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr20:24522800-24528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr20:24523000-24528200	Weak transcription	Brain Anterior Caudate	brain
12	chr20:24523400-24527600	Weak transcription	Fetal Brain Female	brain
13	chr20:24523600-24526800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
15	chr20:24523800-24525600	Strong transcription	Brain Cingulate Gyrus	brain
16	chr20:24523800-24528800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr20:24523800-24528800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:24524000-24525000	Weak transcription	Right Atrium	heart
19	chr20:24524000-24525800	Weak transcription	Fetal Stomach	stomach
20	chr20:24524200-24525200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr20:24524200-24526800	Strong transcription	Brain Angular Gyrus	brain
22	chr20:24524400-24524800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr20:24524400-24525000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
24	chr20:24524600-24525000	Genic enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links