Variant report

Variant	rs73343343
Chromosome Location	chr20:24513383-24513384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6049754	1.00[ASN][1000 genomes]
rs6049772	1.00[ASN][1000 genomes]
rs6049777	1.00[ASN][1000 genomes]
rs73343312	0.87[ASN][1000 genomes]
rs8123492	1.00[ASN][1000 genomes]
rs8123552	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
2	chr20:24508200-24523800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24510000-24515000	Weak transcription	Brain Substantia Nigra	brain
4	chr20:24510200-24515000	Weak transcription	Brain Hippocampus Middle	brain
5	chr20:24510800-24514400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:24510800-24518000	Weak transcription	Gastric	stomach
7	chr20:24510800-24525200	Weak transcription	Left Ventricle	heart
8	chr20:24511200-24513800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr20:24511400-24515800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:24511400-24516200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:24512600-24514200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr20:24512800-24513400	Weak transcription	Brain Anterior Caudate	brain
13	chr20:24513000-24515400	Weak transcription	Brain Angular Gyrus	brain
14	chr20:24513200-24516600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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