Variant report

Variant	rs60371901
Chromosome Location	chr9:21443706-21443707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11998859	0.89[AFR][1000 genomes]
rs11998894	0.91[AFR][1000 genomes]
rs11999009	0.82[AFR][1000 genomes]
rs16938422	0.95[AFR][1000 genomes]
rs7021202	0.87[AFR][1000 genomes]
rs7048663	0.92[AFR][1000 genomes]
rs73652404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652406	0.85[AFR][1000 genomes]
rs7851158	0.95[AFR][1000 genomes]
rs7856449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7862040	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21442000-21443800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:21443200-21444400	Enhancers	Primary B cells from cord blood	blood
3	chr9:21443600-21444000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr9:21443600-21444200	Enhancers	Primary T cells from cord blood	blood
5	chr9:21443600-21444200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:21443600-21444200	Enhancers	GM12878-XiMat	blood
7	chr9:21443600-21444200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:21443600-21445000	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:21443600-21445200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:21443600-21445200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:21443600-21445400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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