Variant report

Variant	rs60372133
Chromosome Location	chr7:3646329-3646330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10230406	0.85[ASN][1000 genomes]
rs10233162	0.85[ASN][1000 genomes]
rs10237270	0.82[ASN][1000 genomes]
rs10245607	0.85[ASN][1000 genomes]
rs10246062	0.82[ASN][1000 genomes]
rs10258910	0.85[ASN][1000 genomes]
rs10260558	0.88[ASN][1000 genomes]
rs10262079	0.82[ASN][1000 genomes]
rs10263338	0.87[ASN][1000 genomes]
rs10267519	0.83[ASN][1000 genomes]
rs10271664	0.82[ASN][1000 genomes]
rs10275915	0.82[ASN][1000 genomes]
rs10275918	0.82[ASN][1000 genomes]
rs10276626	0.85[ASN][1000 genomes]
rs10277776	0.82[ASN][1000 genomes]
rs10280102	0.85[ASN][1000 genomes]
rs1122065	0.82[ASN][1000 genomes]
rs11974255	0.90[ASN][1000 genomes]
rs11976554	0.82[ASN][1000 genomes]
rs11976780	0.83[ASN][1000 genomes]
rs11979907	0.85[ASN][1000 genomes]
rs11979940	0.91[ASN][1000 genomes]
rs16870900	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17133566	0.81[ASN][1000 genomes]
rs17133591	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1922014	0.87[ASN][1000 genomes]
rs1922015	0.88[ASN][1000 genomes]
rs1991758	0.89[ASN][1000 genomes]
rs2016197	0.91[ASN][1000 genomes]
rs2060179	0.92[ASN][1000 genomes]
rs2141825	0.82[ASN][1000 genomes]
rs2178626	0.82[ASN][1000 genomes]
rs2341451	0.83[ASN][1000 genomes]
rs28684473	0.83[ASN][1000 genomes]
rs28712054	0.83[ASN][1000 genomes]
rs3817615	0.85[ASN][1000 genomes]
rs4449688	0.81[ASN][1000 genomes]
rs55785035	0.82[ASN][1000 genomes]
rs56329315	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56669571	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56995955	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57125879	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57473088	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57480717	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57515074	0.82[ASN][1000 genomes]
rs58498999	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58688082	0.85[ASN][1000 genomes]
rs59465686	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60281960	0.92[ASN][1000 genomes]
rs60673182	0.82[ASN][1000 genomes]
rs61175597	0.84[ASN][1000 genomes]
rs61425932	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61531398	0.90[ASN][1000 genomes]
rs6462200	0.90[ASN][1000 genomes]
rs6462201	0.90[ASN][1000 genomes]
rs6462203	0.85[ASN][1000 genomes]
rs6462207	0.85[ASN][1000 genomes]
rs6945446	0.89[ASN][1000 genomes]
rs6959706	0.88[ASN][1000 genomes]
rs6961261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964347	0.83[ASN][1000 genomes]
rs6968326	0.83[ASN][1000 genomes]
rs6971989	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341473	0.82[ASN][1000 genomes]
rs73673633	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73673634	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750820	0.82[ASN][1000 genomes]
rs750821	0.82[ASN][1000 genomes]
rs750822	0.82[ASN][1000 genomes]
rs752586	0.82[ASN][1000 genomes]
rs7782934	0.96[ASN][1000 genomes]
rs7800738	0.87[ASN][1000 genomes]
rs7800891	0.85[ASN][1000 genomes]
rs7802868	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7807210	0.94[ASN][1000 genomes]
rs7811339	0.90[ASN][1000 genomes]
rs957360	0.95[ASN][1000 genomes]
rs9654994	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3636400-3655800	Weak transcription	Aorta	Aorta
2	chr7:3644600-3646600	Enhancers	HUVEC	blood vessel
3	chr7:3644800-3647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:3645200-3660400	Weak transcription	HepG2	liver
5	chr7:3645800-3646400	Enhancers	Pancreas	Pancrea

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