Variant report

Variant	rs16870900
Chromosome Location	chr7:3634767-3634768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10215541	0.80[ASN][1000 genomes]
rs10215554	0.90[JPT][hapmap]
rs10215632	0.83[ASN][1000 genomes]
rs10216009	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10227151	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10230406	0.82[ASN][1000 genomes]
rs10233162	0.80[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10236989	0.81[ASN][1000 genomes]
rs10238783	0.80[JPT][hapmap]
rs10241070	0.81[ASN][1000 genomes]
rs10243981	0.86[JPT][hapmap]
rs10245607	0.82[ASN][1000 genomes]
rs10258910	0.82[ASN][1000 genomes]
rs10260558	0.84[ASN][1000 genomes]
rs10263338	0.83[ASN][1000 genomes]
rs10264275	0.80[ASN][1000 genomes]
rs10272876	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10276626	0.80[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10277776	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10280102	0.82[ASN][1000 genomes]
rs10951254	0.85[CHB][hapmap]
rs11531493	0.80[ASN][1000 genomes]
rs11767639	0.81[CHB][hapmap]
rs11974255	0.87[ASN][1000 genomes]
rs11976780	0.80[CHB][hapmap]
rs11979907	0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11979940	0.88[ASN][1000 genomes]
rs12111969	0.82[JPT][hapmap]
rs12670592	0.81[ASN][1000 genomes]
rs12672248	0.86[JPT][hapmap]
rs1522505	0.80[JPT][hapmap]
rs1608136	0.86[JPT][hapmap]
rs17133420	0.95[JPT][hapmap]
rs17133426	0.95[JPT][hapmap]
rs17133432	0.95[JPT][hapmap]
rs17133439	0.83[JPT][hapmap]
rs17133501	0.80[JPT][hapmap]
rs17133520	0.86[JPT][hapmap]
rs17133523	0.85[JPT][hapmap]
rs17133554	0.80[ASN][1000 genomes]
rs17133555	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs17133566	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs17133591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882429	0.85[JPT][hapmap]
rs1922014	0.91[ASN][1000 genomes]
rs1922015	0.91[ASN][1000 genomes]
rs1922017	0.86[JPT][hapmap]
rs1922019	0.85[JPT][hapmap]
rs1991758	0.86[ASN][1000 genomes]
rs2016197	0.88[ASN][1000 genomes]
rs2060179	0.88[ASN][1000 genomes]
rs2141819	0.90[JPT][hapmap]
rs2141821	0.90[JPT][hapmap]
rs2141825	0.85[ASN][1000 genomes]
rs2177168	0.90[JPT][hapmap]
rs2178626	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2272526	0.84[JPT][hapmap]
rs2272527	0.86[JPT][hapmap]
rs2614966	0.85[CHB][hapmap]
rs28451147	0.81[ASN][1000 genomes]
rs3817615	0.82[ASN][1000 genomes]
rs4291167	0.84[JPT][hapmap]
rs4496870	0.81[JPT][hapmap]
rs56329315	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56669571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56995955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57125879	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57462209	0.82[ASN][1000 genomes]
rs57473088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57480717	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58498999	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58688082	0.82[ASN][1000 genomes]
rs59465686	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60281960	0.88[ASN][1000 genomes]
rs60372133	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61175597	0.81[ASN][1000 genomes]
rs61425932	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61531398	0.86[ASN][1000 genomes]
rs6462121	0.81[JPT][hapmap]
rs6462200	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6462201	0.87[ASN][1000 genomes]
rs6462203	0.82[ASN][1000 genomes]
rs6462207	0.82[ASN][1000 genomes]
rs6945446	0.85[ASN][1000 genomes]
rs6947615	0.85[JPT][hapmap]
rs6959706	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6961261	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6971989	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73673633	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73673634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782934	0.92[ASN][1000 genomes]
rs7787559	0.84[JPT][hapmap]
rs7795323	0.85[JPT][hapmap]
rs7800738	0.83[ASN][1000 genomes]
rs7800891	0.81[ASN][1000 genomes]
rs7800962	0.80[JPT][hapmap]
rs7802868	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805598	0.80[JPT][hapmap]
rs7807210	0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7811339	0.87[ASN][1000 genomes]
rs957360	0.84[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9654994	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9771445	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv887334	chr7:3531275-3635105	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023888	chr7:3539750-3638242	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1017012	chr7:3602397-3638242	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv538679	chr7:3602397-3638242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv605909	chr7:3605340-3638547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3631200-3636000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3632600-3638000	Weak transcription	Fetal Brain Female	brain
3	chr7:3633000-3635000	Weak transcription	HepG2	liver
4	chr7:3633400-3645800	Weak transcription	Pancreas	Pancrea
5	chr7:3634600-3635400	Enhancers	Fetal Brain Male	brain

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