Variant report

Variant	rs10238783
Chromosome Location	chr7:3577665-3577666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10085602	0.81[CEU][hapmap]
rs10215541	0.84[ASN][1000 genomes]
rs10215554	0.81[CEU][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10215632	0.81[ASN][1000 genomes]
rs10216009	0.81[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10227151	0.81[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10236989	0.85[ASN][1000 genomes]
rs10241070	0.85[ASN][1000 genomes]
rs10243981	0.85[JPT][hapmap]
rs10259072	0.81[CEU][hapmap]
rs10264275	0.84[ASN][1000 genomes]
rs10272876	0.81[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10275747	0.85[CEU][hapmap]
rs10277776	0.95[JPT][hapmap]
rs10499338	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs1108879	0.85[CHB][hapmap]
rs1114778	0.85[ASN][1000 genomes]
rs1114779	0.86[ASN][1000 genomes]
rs1114780	0.86[ASN][1000 genomes]
rs11531493	0.84[ASN][1000 genomes]
rs11977942	0.81[CEU][hapmap]
rs12055947	0.82[JPT][hapmap]
rs12111969	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12670592	0.85[ASN][1000 genomes]
rs12672248	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1403160	0.84[ASN][1000 genomes]
rs1403161	0.85[ASN][1000 genomes]
rs1522505	0.81[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1548209	0.83[CHB][hapmap]
rs1608136	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs16870900	0.80[JPT][hapmap]
rs17133420	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs17133426	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs17133432	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17133439	0.94[CHB][hapmap]
rs17133442	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17133497	0.84[ASN][1000 genomes]
rs17133501	0.81[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17133520	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17133523	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs17133529	0.81[ASN][1000 genomes]
rs17133533	0.90[ASN][1000 genomes]
rs17133535	0.85[ASN][1000 genomes]
rs17133554	0.84[ASN][1000 genomes]
rs17133555	0.81[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17133566	0.85[JPT][hapmap]
rs17133591	0.80[JPT][hapmap]
rs1882427	0.85[ASN][1000 genomes]
rs1882428	0.85[ASN][1000 genomes]
rs1882429	0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1922017	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1922019	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2141819	0.90[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2141821	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs2177168	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2177169	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2178626	0.90[JPT][hapmap]
rs2272526	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2272527	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2614966	0.81[JPT][hapmap]
rs2705606	0.82[JPT][hapmap]
rs28412607	0.85[ASN][1000 genomes]
rs28451147	0.86[ASN][1000 genomes]
rs28709062	0.92[ASN][1000 genomes]
rs28832366	0.83[ASN][1000 genomes]
rs35791987	0.85[ASN][1000 genomes]
rs4273759	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4291167	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4496870	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs55878136	0.83[ASN][1000 genomes]
rs55933090	0.85[ASN][1000 genomes]
rs56134531	0.85[ASN][1000 genomes]
rs56234403	0.85[ASN][1000 genomes]
rs56341242	0.85[ASN][1000 genomes]
rs57704507	0.83[ASN][1000 genomes]
rs57743735	0.84[ASN][1000 genomes]
rs58028517	0.92[ASN][1000 genomes]
rs58601265	0.88[ASN][1000 genomes]
rs58748813	0.86[ASN][1000 genomes]
rs59228270	0.86[ASN][1000 genomes]
rs60268542	0.85[ASN][1000 genomes]
rs60867986	0.89[ASN][1000 genomes]
rs61605079	0.83[ASN][1000 genomes]
rs6462121	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462126	0.86[ASN][1000 genomes]
rs6462127	0.86[ASN][1000 genomes]
rs6462128	0.86[ASN][1000 genomes]
rs67253031	0.84[ASN][1000 genomes]
rs67540761	0.84[ASN][1000 genomes]
rs67955951	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68004656	0.90[ASN][1000 genomes]
rs68143552	0.85[ASN][1000 genomes]
rs6947615	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs6959706	0.81[JPT][hapmap]
rs6962132	0.86[ASN][1000 genomes]
rs6966652	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6971989	0.80[JPT][hapmap]
rs73035954	0.88[ASN][1000 genomes]
rs73035962	0.86[ASN][1000 genomes]
rs73035977	0.92[ASN][1000 genomes]
rs73293551	0.85[ASN][1000 genomes]
rs7779462	0.97[ASN][1000 genomes]
rs7780340	0.85[ASN][1000 genomes]
rs7780639	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7787559	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7789656	0.85[ASN][1000 genomes]
rs7791215	0.95[ASN][1000 genomes]
rs7794763	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs7794992	0.95[ASN][1000 genomes]
rs7795323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7800962	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7805283	0.84[ASN][1000 genomes]
rs7805598	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7808972	0.84[ASN][1000 genomes]
rs957360	0.81[CEU][hapmap]
rs9639598	0.85[ASN][1000 genomes]
rs9654994	0.90[JPT][hapmap]
rs9771445	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv605902	chr7:3464896-3598581	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv464270	chr7:3490865-3581357	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv605904	chr7:3490865-3581357	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1034716	chr7:3512406-3616155	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv887334	chr7:3531275-3635105	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1023888	chr7:3539750-3638242	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1030363	chr7:3541046-3577665	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1029264	chr7:3549193-3622532	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1032031	chr7:3554760-3609584	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv538675	chr7:3554760-3609584	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv464271	chr7:3556132-3605340	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv605905	chr7:3556132-3605340	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1025623	chr7:3558521-3606640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv605906	chr7:3559826-3605340	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1027274	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv538676	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1034671	chr7:3565156-3607294	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv538677	chr7:3565156-3607294	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1028274	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv538678	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3567600-3579800	Weak transcription	Spleen	Spleen
2	chr7:3572600-3584600	Weak transcription	Pancreas	Pancrea
3	chr7:3576800-3577800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:3576800-3578400	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:3577000-3577800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:3577000-3578800	Enhancers	Fetal Muscle Leg	muscle
7	chr7:3577000-3580000	Weak transcription	Fetal Kidney	kidney
8	chr7:3577200-3578800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:3577400-3578200	Weak transcription	Fetal Brain Male	brain
10	chr7:3577600-3577800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:3577600-3600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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