Variant report

Variant	rs10275747
Chromosome Location	chr7:3640169-3640170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10085602	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215554	0.83[CEU][hapmap]
rs10216009	0.83[CEU][hapmap]
rs10227151	0.83[CEU][hapmap]
rs10231366	1.00[ASN][1000 genomes]
rs10236517	1.00[ASN][1000 genomes]
rs10238783	0.85[CEU][hapmap]
rs10247668	1.00[ASN][1000 genomes]
rs10256371	1.00[ASN][1000 genomes]
rs10259072	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260149	1.00[ASN][1000 genomes]
rs10272876	0.83[CEU][hapmap]
rs10499336	0.83[CEU][hapmap]
rs10499337	0.83[CEU][hapmap]
rs10499338	0.85[CEU][hapmap]
rs11972207	1.00[ASN][1000 genomes]
rs11976762	1.00[ASN][1000 genomes]
rs11977942	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12111969	0.82[CEU][hapmap]
rs12672248	0.83[CEU][hapmap]
rs1522505	0.83[CEU][hapmap]
rs1608136	0.83[CEU][hapmap]
rs17133426	0.83[CEU][hapmap]
rs17133439	0.86[CEU][hapmap]
rs17133501	0.83[CEU][hapmap]
rs17133523	0.82[CEU][hapmap]
rs17133555	0.83[CEU][hapmap]
rs17824994	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1882429	0.81[CEU][hapmap]
rs1922017	0.83[CEU][hapmap]
rs1922019	0.83[CEU][hapmap]
rs2141820	0.83[CEU][hapmap]
rs2177168	0.83[CEU][hapmap]
rs2272526	0.80[CEU][hapmap]
rs2272527	0.82[CEU][hapmap]
rs56025717	1.00[ASN][1000 genomes]
rs6462121	0.85[CEU][hapmap]
rs6943054	1.00[ASN][1000 genomes]
rs6947615	0.83[CEU][hapmap]
rs73037685	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73039639	1.00[ASN][1000 genomes]
rs7776767	1.00[ASN][1000 genomes]
rs7792749	1.00[ASN][1000 genomes]
rs7793515	1.00[ASN][1000 genomes]
rs7793775	1.00[ASN][1000 genomes]
rs7795323	0.83[CEU][hapmap]
rs7800962	0.85[CEU][hapmap]
rs7805598	0.83[CEU][hapmap]
rs957360	0.85[CEU][hapmap]
rs9771445	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3633400-3645800	Weak transcription	Pancreas	Pancrea
2	chr7:3636400-3655800	Weak transcription	Aorta	Aorta

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