Variant report

Variant	rs10247668
Chromosome Location	chr7:3688447-3688448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3522949..3523470-chr7:3687761..3688597,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10085602	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10230406	0.85[EUR][1000 genomes]
rs10231366	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233162	0.85[CEU][hapmap]
rs10236517	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245607	0.85[EUR][1000 genomes]
rs10256371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258910	0.85[EUR][1000 genomes]
rs10259072	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10260149	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263338	0.90[CEU][hapmap]
rs10271664	0.84[EUR][1000 genomes]
rs10275747	1.00[ASN][1000 genomes]
rs10276626	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10279369	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10280102	0.84[EUR][1000 genomes]
rs11971242	0.81[EUR][1000 genomes]
rs11972207	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976762	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976780	0.82[EUR][1000 genomes]
rs11978956	0.81[EUR][1000 genomes]
rs11979907	0.85[EUR][1000 genomes]
rs13223746	0.81[CEU][hapmap]
rs17133471	1.00[CHB][hapmap]
rs17133624	0.90[CEU][hapmap]
rs2002670	0.81[EUR][1000 genomes]
rs2002671	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs2082359	0.83[EUR][1000 genomes]
rs2141820	1.00[CHB][hapmap]
rs2341447	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs2341448	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2341449	0.81[EUR][1000 genomes]
rs2341451	0.83[EUR][1000 genomes]
rs2341452	0.81[EUR][1000 genomes]
rs2341453	0.81[EUR][1000 genomes]
rs28698721	0.84[EUR][1000 genomes]
rs28740932	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3817615	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs41874	1.00[CHB][hapmap]
rs4449688	0.81[EUR][1000 genomes]
rs56025717	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57444839	0.83[EUR][1000 genomes]
rs57515074	0.81[EUR][1000 genomes]
rs57709741	0.83[EUR][1000 genomes]
rs58688082	0.83[EUR][1000 genomes]
rs60673182	0.81[EUR][1000 genomes]
rs6462200	0.90[CEU][hapmap]
rs6462207	0.84[EUR][1000 genomes]
rs6462212	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs6462218	0.81[EUR][1000 genomes]
rs6943054	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959706	0.85[CEU][hapmap]
rs6964347	0.90[CEU][hapmap]
rs73037685	1.00[ASN][1000 genomes]
rs73039639	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792749	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793775	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800550	0.82[EUR][1000 genomes]
rs7800891	0.86[EUR][1000 genomes]
rs7805946	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs891856	0.84[EUR][1000 genomes]
rs957360	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv605934	chr7:3687012-3738147	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3671000-3695600	Weak transcription	Fetal Intestine Small	intestine
2	chr7:3676200-3688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:3679800-3690400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:3681200-3695400	Weak transcription	Spleen	Spleen
5	chr7:3683000-3693000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:3683200-3695600	Weak transcription	Pancreas	Pancrea
7	chr7:3683400-3693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:3683800-3696000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:3688400-3688600	Strong transcription	Aorta	Aorta
10	chr7:3688400-3703200	Weak transcription	Muscle Satellite Cultured Cells	--

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