Variant report

Variant	rs60372422
Chromosome Location	chr9:85653633-85653634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57579116	1.00[AMR][1000 genomes]
rs59312458	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60729079	1.00[AMR][1000 genomes]
rs61286285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61585462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469465	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:85644200-85654800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85647400-85654200	Weak transcription	Gastric	stomach
6	chr9:85647400-85656400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85649800-85654200	Weak transcription	Pancreas	Pancrea
8	chr9:85650200-85654200	Weak transcription	A549	lung
9	chr9:85650200-85656600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links