Variant report

Variant	rs61286285
Chromosome Location	chr9:85659432-85659433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57579116	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59312458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60372422	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60729079	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61585462	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7033636	0.82[AFR][1000 genomes]
rs73469465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469489	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471429	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
5	chr9:85657000-85662400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:85657200-85660400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85657200-85662400	Weak transcription	Hela-S3	cervix
8	chr9:85657400-85662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:85658200-85661400	Weak transcription	A549	lung
10	chr9:85659400-85660400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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