Variant report

Variant	rs73471429
Chromosome Location	chr9:85664101-85664102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57254984	0.83[AMR][1000 genomes]
rs57579116	0.97[AFR][1000 genomes]
rs58372258	0.83[AMR][1000 genomes]
rs60729079	0.97[AFR][1000 genomes]
rs61286285	0.82[AFR][1000 genomes]
rs61466243	0.82[AFR][1000 genomes]
rs7033636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043342	0.83[AMR][1000 genomes]
rs73469482	0.85[AFR][1000 genomes]
rs73471442	0.83[AMR][1000 genomes]
rs73471448	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:85660400-85664400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:85663200-85664400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr9:85663200-85676400	Weak transcription	Gastric	stomach
6	chr9:85663400-85670800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:85663600-85664200	Weak transcription	Right Ventricle	heart
8	chr9:85663600-85673400	Weak transcription	Stomach Mucosa	stomach
9	chr9:85663800-85671200	Weak transcription	A549	lung
10	chr9:85663800-85674200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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