Variant report

Variant	rs73471442
Chromosome Location	chr9:85679326-85679327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11790513	0.82[ASN][1000 genomes]
rs11790542	0.82[ASN][1000 genomes]
rs11793937	0.86[ASN][1000 genomes]
rs11795101	0.80[ASN][1000 genomes]
rs17085934	0.89[EUR][1000 genomes]
rs17085937	0.89[EUR][1000 genomes]
rs17085989	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17307723	0.80[ASN][1000 genomes]
rs1948797	1.00[EUR][1000 genomes]
rs55885456	0.98[ASN][1000 genomes]
rs57254984	1.00[AMR][1000 genomes]
rs58372258	1.00[ASN][1000 genomes]
rs58472540	0.89[EUR][1000 genomes]
rs6559692	0.89[EUR][1000 genomes]
rs7029474	0.89[EUR][1000 genomes]
rs7033636	0.83[AMR][1000 genomes]
rs7043342	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73467522	0.89[EUR][1000 genomes]
rs73467529	0.89[EUR][1000 genomes]
rs73467583	0.89[EUR][1000 genomes]
rs73467584	0.89[EUR][1000 genomes]
rs73471429	0.83[AMR][1000 genomes]
rs73471448	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73471454	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85674400-85679800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr9:85676000-85679400	Active TSS	Rectal Mucosa Donor 31	rectum
3	chr9:85677400-85679400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr9:85678400-85679400	Active TSS	Duodenum Mucosa	Duodenum
5	chr9:85678600-85679600	Weak transcription	Pancreas	Pancrea
6	chr9:85678600-85681400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:85678800-85681600	Weak transcription	HMEC	breast
8	chr9:85679000-85679400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr9:85679000-85680600	Weak transcription	Stomach Mucosa	stomach
10	chr9:85679200-85679400	Enhancers	A549	lung
11	chr9:85679200-85687800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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