Variant report

Variant	rs58372258
Chromosome Location	chr9:85672518-85672519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11790513	0.82[ASN][1000 genomes]
rs11790542	0.82[ASN][1000 genomes]
rs11793937	0.86[ASN][1000 genomes]
rs11795101	0.80[ASN][1000 genomes]
rs17085989	0.96[ASN][1000 genomes]
rs17307723	0.80[ASN][1000 genomes]
rs55885456	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57254984	0.88[AFR][1000 genomes]
rs7033636	0.83[AMR][1000 genomes]
rs7043342	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73471429	0.83[AMR][1000 genomes]
rs73471442	1.00[ASN][1000 genomes]
rs73471448	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471454	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85663200-85676400	Weak transcription	Gastric	stomach
2	chr9:85663600-85673400	Weak transcription	Stomach Mucosa	stomach
3	chr9:85663800-85674200	Weak transcription	Pancreas	Pancrea
4	chr9:85670600-85672600	Enhancers	Fetal Intestine Large	intestine
5	chr9:85670800-85673200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:85671600-85673000	Enhancers	Duodenum Mucosa	Duodenum
7	chr9:85671600-85673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:85671800-85675200	Weak transcription	Fetal Intestine Small	intestine
9	chr9:85672000-85672600	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr9:85672400-85674400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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