Variant report

Variant	rs17085989
Chromosome Location	chr9:85661953-85661954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11790513	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11790542	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11793937	0.82[ASN][1000 genomes]
rs17085934	0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17085937	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1948797	1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55885456	0.94[ASN][1000 genomes]
rs58372258	0.96[ASN][1000 genomes]
rs58472540	0.89[EUR][1000 genomes]
rs6559692	0.84[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7029474	0.89[EUR][1000 genomes]
rs7043342	0.94[ASN][1000 genomes]
rs73467522	0.89[EUR][1000 genomes]
rs73467529	0.89[EUR][1000 genomes]
rs73467583	0.89[EUR][1000 genomes]
rs73467584	0.89[EUR][1000 genomes]
rs73471442	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73471448	0.96[ASN][1000 genomes]
rs73471454	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
5	chr9:85657000-85662400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:85657200-85662400	Weak transcription	Hela-S3	cervix
7	chr9:85657400-85662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:85660400-85664400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:85660800-85663000	Weak transcription	Stomach Mucosa	stomach
10	chr9:85661400-85663800	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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