Variant report

Variant	rs55885456
Chromosome Location	chr9:85686069-85686070
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11790513	0.84[ASN][1000 genomes]
rs11790542	0.84[ASN][1000 genomes]
rs11793937	0.88[ASN][1000 genomes]
rs11795101	0.82[ASN][1000 genomes]
rs17085989	0.94[ASN][1000 genomes]
rs17307723	0.82[ASN][1000 genomes]
rs58372258	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471442	0.98[ASN][1000 genomes]
rs73471448	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73471454	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831643	chr9:85679431-85798990	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85679200-85687800	Weak transcription	Fetal Intestine Small	intestine
2	chr9:85679800-85686600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:85682400-85706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:85683600-85686400	Weak transcription	Pancreas	Pancrea
5	chr9:85683800-85687200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:85684000-85686600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:85685000-85686600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:85685000-85696600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:85686000-85686200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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