Variant report

Variant	rs1948797
Chromosome Location	chr9:85657836-85657837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17085934	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17085937	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17085989	1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58472540	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62561896	0.94[ASN][1000 genomes]
rs6559692	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7029474	0.89[EUR][1000 genomes]
rs73467522	0.89[EUR][1000 genomes]
rs73467529	0.89[EUR][1000 genomes]
rs73467583	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73467584	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73471442	1.00[EUR][1000 genomes]
rs73471454	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656400-85659400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
6	chr9:85657000-85662400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:85657200-85660400	Weak transcription	Stomach Mucosa	stomach
8	chr9:85657200-85662400	Weak transcription	Hela-S3	cervix
9	chr9:85657400-85662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:85657600-85658000	Weak transcription	A549	lung
11	chr9:85657800-85658600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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