Variant report

Variant	rs62561896
Chromosome Location	chr9:85632621-85632622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17085934	0.82[ASN][1000 genomes]
rs17085937	0.94[ASN][1000 genomes]
rs1948797	0.94[ASN][1000 genomes]
rs58472540	0.91[ASN][1000 genomes]
rs6559692	0.82[ASN][1000 genomes]
rs7029474	0.82[ASN][1000 genomes]
rs73467522	0.82[ASN][1000 genomes]
rs73467529	0.82[ASN][1000 genomes]
rs73467583	1.00[ASN][1000 genomes]
rs73467584	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85603200-85643800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:85610800-85642000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:85613600-85643400	Weak transcription	Colonic Mucosa	Colon
4	chr9:85617200-85645800	Weak transcription	Stomach Mucosa	stomach
5	chr9:85621000-85645400	Weak transcription	Gastric	stomach
6	chr9:85623600-85634800	Weak transcription	Pancreas	Pancrea
7	chr9:85623600-85643200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:85628400-85634800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:85628600-85643400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:85629000-85636000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:85629000-85638800	Weak transcription	Fetal Stomach	stomach
12	chr9:85630000-85641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:85630600-85633000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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