Variant report

Variant	rs603801
Chromosome Location	chr9:92780487-92780488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1036699	1.00[AFR][1000 genomes]
rs10993747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12339520	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs497115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547974	0.84[AMR][1000 genomes]
rs602063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs64161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:92772200-92780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:92773800-92780800	Weak transcription	Primary B cells from cord blood	blood
4	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:92775800-92780800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:92775800-92780800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:92775800-92781200	Weak transcription	HSMMtube	muscle
9	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
10	chr9:92777800-92782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:92778000-92781400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:92778800-92781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:92780400-92780600	Enhancers	Lung	lung
14	chr9:92780400-92781600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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