Variant report

Variant	rs12339520
Chromosome Location	chr9:92773571-92773572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1036699	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10993747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12350621	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs497115	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs547974	0.82[AMR][1000 genomes]
rs57835569	0.87[EUR][1000 genomes]
rs602063	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs603801	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs64161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs648329	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs652913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72755008	0.87[EUR][1000 genomes]
rs72755009	0.88[EUR][1000 genomes]
rs72755011	0.88[EUR][1000 genomes]
rs72755015	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:92770800-92774800	Weak transcription	Fetal Intestine Large	intestine
4	chr9:92770800-92775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:92770800-92775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:92771800-92775400	Weak transcription	HSMMtube	muscle
7	chr9:92771800-92776400	Weak transcription	HSMM	muscle
8	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:92772000-92773800	Enhancers	Primary B cells from cord blood	blood
10	chr9:92772000-92775200	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:92772000-92775200	Weak transcription	Stomach Mucosa	stomach
12	chr9:92772200-92780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:92772400-92775200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:92772600-92775200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:92773000-92775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:92773000-92775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:92773400-92780400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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