Variant report

Variant	rs72755009
Chromosome Location	chr9:92758957-92758958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:92756890..92759147-chr9:92762216..92764609,2	MCF-7	breast:
2	chr9:92217619..92218164-chr9:92758824..92759396,2	MCF-7	breast:
3	chr9:92218708..92219342-chr9:92758550..92759211,2	MCF-7	breast:
4	chr9:92230289..92231170-chr9:92758244..92759563,4	MCF-7	breast:
5	chr9:92758301..92760371-chr9:92760953..92763123,2	MCF-7	breast:
6	chr9:92681495..92682068-chr9:92758708..92759575,3	MCF-7	breast:
7	chr9:92739296..92741808-chr9:92758775..92761522,2	MCF-7	breast:
8	chr9:92681447..92682404-chr9:92758846..92759379,3	MCF-7	breast:
9	chr9:92216749..92221414-chr9:92756839..92763409,10	MCF-7	breast:
10	chr9:92217989..92218568-chr9:92758907..92759509,2	MCF-7	breast:
11	chr9:92218418..92219230-chr9:92758601..92759142,2	MCF-7	breast:
12	chr9:92748187..92750208-chr9:92758862..92760801,2	MCF-7	breast:
13	chr9:92755082..92756623-chr9:92757434..92759681,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction
ENSG00000237626	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1036699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993587	0.96[ASN][1000 genomes]
rs12339520	0.88[EUR][1000 genomes]
rs12350621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906012	0.96[ASN][1000 genomes]
rs16906019	0.96[ASN][1000 genomes]
rs16906030	0.96[ASN][1000 genomes]
rs16906038	0.96[ASN][1000 genomes]
rs16906046	0.96[ASN][1000 genomes]
rs2099918	0.96[ASN][1000 genomes]
rs2119293	0.96[ASN][1000 genomes]
rs2890110	0.96[ASN][1000 genomes]
rs57835569	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58400952	0.95[ASN][1000 genomes]
rs60994320	0.96[ASN][1000 genomes]
rs61344087	0.96[ASN][1000 genomes]
rs72755008	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755015	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755016	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
3	chr9:92752800-92759600	Enhancers	Liver	Liver
4	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
5	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
6	chr9:92754200-92759200	Enhancers	Placenta	Placenta
7	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:92756000-92761800	Weak transcription	Brain Substantia Nigra	brain
9	chr9:92756200-92761800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:92756800-92760600	Weak transcription	NHDF-Ad	bronchial
11	chr9:92756800-92761600	Weak transcription	Psoas Muscle	Psoas
12	chr9:92757000-92761000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:92757000-92761200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:92757200-92759400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:92757200-92761200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:92757200-92761800	Weak transcription	Hela-S3	cervix
17	chr9:92757200-92762400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:92757400-92760800	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:92757400-92761600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:92757400-92761600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:92757400-92761600	Weak transcription	A549	lung
22	chr9:92757400-92761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:92757400-92770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:92757600-92759800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:92757600-92761600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:92757600-92761800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:92757600-92762000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:92757600-92762200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr9:92757600-92764200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:92757600-92770000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:92757800-92760400	Enhancers	Esophagus	oesophagus
32	chr9:92757800-92760800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:92757800-92761000	Weak transcription	Primary B cells from cord blood	blood
34	chr9:92757800-92761000	Weak transcription	Pancreas	Pancrea
35	chr9:92757800-92762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:92758000-92759000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr9:92758000-92761200	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:92758000-92761600	Weak transcription	Left Ventricle	heart
39	chr9:92758000-92761600	Weak transcription	Right Ventricle	heart
40	chr9:92758000-92761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:92758000-92762200	Weak transcription	Fetal Kidney	kidney
42	chr9:92758200-92760800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr9:92758200-92761000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:92758200-92761000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:92758200-92761000	Weak transcription	Fetal Lung	lung
46	chr9:92758200-92761600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:92758200-92761600	Weak transcription	Ovary	ovary
48	chr9:92758200-92761600	Weak transcription	Spleen	Spleen
49	chr9:92758200-92761800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:92758200-92762200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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