Variant report

Variant	rs2099918
Chromosome Location	chr9:92751351-92751352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1036699	0.96[ASN][1000 genomes]
rs10993587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350621	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs16905942	0.96[EUR][1000 genomes]
rs16905944	0.95[EUR][1000 genomes]
rs16905946	0.96[EUR][1000 genomes]
rs16906012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906038	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890109	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2890110	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528191	1.00[AFR][1000 genomes]
rs57418071	0.87[EUR][1000 genomes]
rs57835569	0.96[ASN][1000 genomes]
rs58400952	0.98[ASN][1000 genomes]
rs58839052	0.96[EUR][1000 genomes]
rs59750037	0.96[EUR][1000 genomes]
rs601128	1.00[AFR][1000 genomes]
rs60144596	0.96[EUR][1000 genomes]
rs60994320	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61344087	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492835	0.96[EUR][1000 genomes]
rs620311	1.00[AFR][1000 genomes]
rs72755008	0.96[ASN][1000 genomes]
rs72755009	0.96[ASN][1000 genomes]
rs72755011	0.96[ASN][1000 genomes]
rs72755015	0.96[ASN][1000 genomes]
rs72755016	0.95[ASN][1000 genomes]
rs749195	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92747600-92751400	Weak transcription	Right Atrium	heart
4	chr9:92747600-92753200	Weak transcription	NHEK	skin
5	chr9:92748600-92754400	Weak transcription	Lung	lung
6	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
7	chr9:92749000-92752800	Enhancers	Placenta	Placenta
8	chr9:92749000-92753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:92749200-92753000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:92749600-92752200	Enhancers	Fetal Heart	heart
11	chr9:92750000-92751600	Enhancers	HSMM	muscle
12	chr9:92750000-92751600	Enhancers	HSMMtube	muscle
13	chr9:92750200-92751600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr9:92750200-92752400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:92750400-92751400	Weak transcription	Primary B cells from cord blood	blood
17	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:92750600-92751400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:92750600-92755400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:92750800-92755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:92751000-92751400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:92751200-92751800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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