Variant report

Variant	rs749195
Chromosome Location	chr9:92717102-92717103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92712626..92715302-chr9:92716416..92719333,3	MCF-7	breast:
2	chr9:92706967..92708489-chr9:92716567..92719415,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118987	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs10119836	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10121885	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs10124931	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10991825	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs10993587	0.95[EUR][1000 genomes]
rs16905942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905944	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906012	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs16906019	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs16906030	0.96[EUR][1000 genomes]
rs16906038	0.95[EUR][1000 genomes]
rs16906046	0.96[EUR][1000 genomes]
rs2099918	0.96[EUR][1000 genomes]
rs2119293	0.96[EUR][1000 genomes]
rs2890108	0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2890109	0.81[EUR][1000 genomes]
rs2890110	0.95[EUR][1000 genomes]
rs57418071	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58357255	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58839052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021050	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59052558	0.98[ASN][1000 genomes]
rs59127989	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59750037	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60144596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60994320	0.97[EUR][1000 genomes]
rs61344087	0.95[EUR][1000 genomes]
rs61492835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018468	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs7036239	0.81[ASN][1000 genomes]
rs73649353	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92705600-92719200	Weak transcription	Ovary	ovary
2	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
3	chr9:92713600-92718400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:92714200-92718400	Enhancers	Fetal Stomach	stomach
5	chr9:92715200-92717200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr9:92715800-92717200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:92716000-92717600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:92716200-92717200	Enhancers	Fetal Lung	lung
9	chr9:92716200-92717200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:92716200-92717200	Enhancers	Stomach Smooth Muscle	stomach
11	chr9:92716200-92717400	Enhancers	Fetal Brain Female	brain
12	chr9:92716200-92717600	Enhancers	Gastric	stomach
13	chr9:92716200-92718000	Enhancers	Adipose Nuclei	Adipose
14	chr9:92716400-92717200	Enhancers	Colon Smooth Muscle	Colon
15	chr9:92716400-92720400	Weak transcription	NHDF-Ad	bronchial
16	chr9:92716600-92718000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:92716600-92718200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr9:92716800-92717400	Enhancers	Brain Germinal Matrix	brain
19	chr9:92716800-92717600	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:92716800-92719000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:92716800-92723200	Weak transcription	Pancreas	Pancrea
22	chr9:92716800-92724000	Weak transcription	Esophagus	oesophagus
23	chr9:92717000-92717400	Weak transcription	Psoas Muscle	Psoas
24	chr9:92717000-92724200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links