Variant report

Variant	rs16906019
Chromosome Location	chr9:92739048-92739049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:92738863-92739063	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000237626	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1036699	0.96[ASN][1000 genomes]
rs10993587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350621	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs16905942	0.96[EUR][1000 genomes]
rs16905944	0.95[EUR][1000 genomes]
rs16905946	0.96[EUR][1000 genomes]
rs16906012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906038	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890109	0.85[EUR][1000 genomes]
rs2890110	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57418071	0.87[EUR][1000 genomes]
rs57835569	0.96[ASN][1000 genomes]
rs58400952	0.98[ASN][1000 genomes]
rs58839052	0.96[EUR][1000 genomes]
rs59750037	0.96[EUR][1000 genomes]
rs60144596	0.96[EUR][1000 genomes]
rs60994320	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61344087	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492835	0.96[EUR][1000 genomes]
rs7044978	1.00[YRI][hapmap]
rs72755008	0.96[ASN][1000 genomes]
rs72755009	0.96[ASN][1000 genomes]
rs72755011	0.96[ASN][1000 genomes]
rs72755015	0.96[ASN][1000 genomes]
rs72755016	0.95[ASN][1000 genomes]
rs749195	0.96[EUR][1000 genomes]
rs7853547	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92733400-92740200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:92738200-92740400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:92738400-92743000	Weak transcription	Aorta	Aorta
4	chr9:92738800-92740200	Weak transcription	Fetal Lung	lung
5	chr9:92739000-92739400	Enhancers	Left Ventricle	heart

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